PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma178g00430.1
Common NameZOSMA_178G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 119aa    MW: 13569.7 Da    PI: 8.2371
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma178g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-1179101426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C +++ t tCk+Gd+CkF+H+
  Zosma178g00430.1  79 KDCAHYMLTRTCKFGDTCKFNHP 101
                       57********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00375102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.42775103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-678102IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-979101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-481100IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MLFFNLCNLP FHSFSLYVSA FLLHFFQYLH IALYHQSALG SHNSIGQGDA MFSTNSLVNR  60
PRIQTASHLS IYPQRPLEKD CAHYMLTRTC KFGDTCKFNH PIWVPVGGMP NWNEVMVC*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420696.12e-42PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_009420703.12e-42PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q33e-33C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0K9PRT77e-84A0A0K9PRT7_ZOSMR; Uncharacterized protein
STRINGVIT_19s0085g01180.t013e-41(Vitis vinifera)
STRINGXP_010260864.13e-41(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-35floral homeotic protein (HUA1)