PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma178g00480.1
Common NameZOSMA_178G00480
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 248aa    MW: 29158.3 Da    PI: 9.3997
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma178g00480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.77.4e-30145200156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH+rFv+ ++ LGG+++AtPk+i+++++v++Lt+++vkSHLQkYR++
  Zosma178g00480.1 145 KERRCWSPELHRRFVHTLQILGGPHVATPKQIRQILQVDDLTNDEVKSHLQKYRMH 200
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.076142202IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-24142201IPR009057Homeodomain-like
SuperFamilySSF466899.68E-15142202IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23145200IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSLQKQQEYV DALEKERDKI AIFRRDLPLS LDLLDRVIKN YRGEICKVAA AMPILVVDEE  60
EERCVDDSTP ILKEFIPLKP TVLKKLNEDD DDDEGDRLEK MSRCSWLKSA QLWNNDKKTL  120
SSPNKNENKF LLKHHHRDQH HQQRKERRCW SPELHRRFVH TLQILGGPHV ATPKQIRQIL  180
QVDDLTNDEV KSHLQKYRMH AKWSNRETKI NGDPKSVKPV VMWEPRGLTY SNQLLGHRIR  240
STAPFQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PRU10.0A0A0K9PRU1_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.11e-27G2-like family protein