PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma179g00360.1
Common NameZOSMA_179G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SAP
Protein Properties Length: 420aa    MW: 46191.7 Da    PI: 5.2921
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma179g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP396.53.1e-12134123413
               SAP   3 sssssssseseegseggeggdassgese..gpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllw 93 
                       sssss+ s             +s    +   +s++r+   ++vwpe f+e++a+++a +a++  G+la+a+al n+fqvcstwr  s+s+llw
  Zosma179g00360.1   3 SSSSSEYS-------------QSCRLEGepLSSRQRSEDGDGVWPEHFVESVAIRLANEAAKLDGKLASAQALTNLFQVCSTWRRASQSELLW 82 
                       33332222.............22222220035667777899**************************************************** PP

               SAP  94 qrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstf 186
                       q l++ iW +  l r tW+eey y+hrta nfrt+++++ + +++++      ++++l Cr+l++sd+yla+G++dG+vrlf+l +++h+ tf
  Zosma179g00360.1  83 QTLSHDIWFVDALRRPTWEEEYSYWHRTAVNFRTGNSKHREINIHDSP-----ENNRLACRRLTVSDHYLASGYVDGSVRLFELPSSRHIATF 170
                       ***************************************999988762.....2358************************************ PP

               SAP 187 lpq.hrdrlGrfsravsGivisdsrlvfatldGdihvavidgag..aaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaet 276
                       +p+ +r +lG fsr++sG++++ s+lvfa+  Gdi va  d +    + +r a +G++v+dG+lvdf+G+g +wvGl++Gvp r+f++W  + 
  Zosma179g00360.1 171 HPDlNRAHLGLFSRSISGLFLEASTLVFASQAGDIEVASTDEDVddRGISRLARVGNLVEDGVLVDFTGKGSYWVGLFSGVPDRSFRVWSFNE 263
                       **835789*******************************9876555899****************************************9998 PP

               SAP 277 ee..lvfvGGsltdPeavmGWhmlteltelvGrvrvtere.......tavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvv 360
                       +e  l fvGG l +P+av GW mlt++  +vGrvrv e         ++v C s+ + + ++  +g+ l+e++    + v+s+d  +  ++vv
  Zosma179g00360.1 264 DEvaLLFVGGNLMNPNAVIGWRMLTDFPSVVGRVRVVEDRsyqdgvvAVVGCSSSFIQTAEVSGEGMTLEEHSLGGMVAVGSVDLCEGNLMVV 356
                       883357******************************986322223324678****************999766666667*******9999999 PP

               SAP 361 ds.rGvatvrrvenleevcrfrvrg..aqrgvlgCvnggyalvyaggvlrvWeiek 413
                       +s  G a+v++  ++eevcrf+  g    + + g +n gy++v+ g  ++vW++ +
  Zosma179g00360.1 357 ESmTGLAKVHQLRTMEEVCRFSTGGavHGGSIAGGLNWGYVVVCRGNRIKVWDVRT 412
                       8647********************9744567899*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.5E-558109IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.3E-559127No hitNo description
SuperFamilySSF509781.04E-10136176IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.1E-9140156IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.102.7E-4157265IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.04E-10226413IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.1E-9338413IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSSSSSSEYS QSCRLEGEPL SSRQRSEDGD GVWPEHFVES VAIRLANEAA KLDGKLASAQ  60
ALTNLFQVCS TWRRASQSEL LWQTLSHDIW FVDALRRPTW EEEYSYWHRT AVNFRTGNSK  120
HREINIHDSP ENNRLACRRL TVSDHYLASG YVDGSVRLFE LPSSRHIATF HPDLNRAHLG  180
LFSRSISGLF LEASTLVFAS QAGDIEVAST DEDVDDRGIS RLARVGNLVE DGVLVDFTGK  240
GSYWVGLFSG VPDRSFRVWS FNEDEVALLF VGGNLMNPNA VIGWRMLTDF PSVVGRVRVV  300
EDRSYQDGVV AVVGCSSSFI QTAEVSGEGM TLEEHSLGGM VAVGSVDLCE GNLMVVESMT  360
GLAKVHQLRT MEEVCRFSTG GAVHGGSIAG GLNWGYVVVC RGNRIKVWDV RTGINSDRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778313.11e-109transcriptional regulator STERILE APETALA
TrEMBLA0A0K9PRP20.0A0A0K9PRP2_ZOSMR; Putative Transcriptional regulator STERILE APETALA
STRINGXP_008778313.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1848179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.17e-78SAP family protein