PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma17g00060.1

Common Name

ZOSMA_17G00060

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 263aa MW: 30072.3 Da PI: 7.8926

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma17g00060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.7	8.9e-14	6	98	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+ +GFsv +++k+ + ++ +++++ Csk+ +++ t+ +rr++ ++r+gC a++k k+ + +++w+ ++++ +HnH+++ Zosma17g00060.1 6 YYDFASPIGFSVHLRSTKNIldkeTGQKILVMKRLLCSKQDSPNLILPPTNGTRRKNGVSRCGCLASIKFKRIDrSDNWVTDSVNFDHNHPFT 98 999*******99887765664344556789********9999999******************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-10	6	98	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-8	220	260	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MAVQSYYDFA SPIGFSVHLR STKNILDKET GQKILVMKRL LCSKQDSPNL ILPPTNGTRR 60 KNGVSRCGCL ASIKFKRIDR SDNWVTDSVN FDHNHPFTTP SKIRYLLINR SISYTSKLLF 120 SSLADVNVPV SQQAAYFSNQ LGGLQNMGCM TLDINNMVRD DRIDLKNYDV DLIVEEFEMT 180 KLENADFFYD LVKDDEGRLK HLFWADPTMI ENYKLFRDSV TFDTTYKTNV YSMVFGMFCG 240 VNHHRKTTIF GSAFLSNENV DV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PR43	0.0	A0A0K9PR43_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-35	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma17g00060.1