PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma17g00260.1
Common NameZOSMA_17G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 128aa    MW: 14185 Da    PI: 7.8581
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma17g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.47.1e-1150122171
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkke 71 
                      +fY  YA  +GF+vr+  sk    +  i +++fvCsk+g++ ++ ++     +k +r++ + r +C a+++ k +
  Zosma17g00260.1  50 QFYYCYAGYAGFDVRRYFSKLV--DSVIQSKKFVCSKQGESMKKMDTnlveCHKISRKSHNVRESCGAQITFKID 122
                      6***************998887..999*************999988889887888899999*********98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-750122IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDDDVHTSIS IDSPSCNTNA LSIVKSNDTS PPPPIPYVGQ IFPDLESGRQ FYYCYAGYAG  60
FDVRRYFSKL VDSVIQSKKF VCSKQGESMK KMDTNLVECH KISRKSHNVR ESCGAQITFK  120
IDTGTTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PR658e-90A0A0K9PR65_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.14e-09FAR1-related sequence 12