PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma17g00420.1

Common Name

ZOSMA_17G00420

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

MYB_related

Protein Properties

Length: 209aa MW: 22584.4 Da PI: 9.7263

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma17g00420.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.1	3.6e-12	97	141	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ +++ + ++lG+g+W+ I+r++ +Rt+ q+ s+ qky Zosma17g00420.1 97 PWSEEEHGRFLFGLEKLGKGDWRGISRRFVCTRTPTQVASHAQKY 141 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.125	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	1.33E-16	91	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-16	93	145	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-6	94	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-9	95	140	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-10	97	141	IPR001005	SANT/Myb domain
CDD	cd00167	1.81E-7	97	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MMMNIQHNSK PCIGNGGLKL FGVQLNTHSP PSSSSSSSSS SPVASTSSAS SLSSLLFVTE 60 AKTNKISAAD NVRCECHPST GLIQCTSSAE RRKKGIPWSE EEHGRFLFGL EKLGKGDWRG 120 ISRRFVCTRT PTQVASHAQK YFLRQSNLGK RKRRSSLFDE IESLSKPLCF STNSEDVVVG 180 GKIETDGTNI LNPLTTTEDS VKPADRST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q7XC57	1e-42	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A0K9PTB2	1e-151	A0A0K9PTB2_ZOSMR; Myb-like transcription factor family protein
STRING	OS10T0561400-02	6e-41	(Oryza sativa)
STRING	ORGLA10G0136800.1	6e-41	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4231	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	8e-39	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Zosma17g00420.1

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]