PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma17g00600.1
Common NameZOSMA_17G00600
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 205aa    MW: 22155.1 Da    PI: 5.2858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma17g00600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.19e-134592355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +    +Wv+eIr p   gk kr++lg++  +e+Aa a++ a  +l+g
  Zosma17g00600.1 45 YRGVRCRG--VKWVSEIRQP---GKAKRIWLGTYHLPEMAAIAYDVASFALRG 92
                     9***9655..69*******8...545*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-2344102IPR001471AP2/ERF domain
PROSITE profilePS5103217.8244100IPR001471AP2/ERF domain
SMARTSM003802.8E-2444106IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1744102IPR016177DNA-binding domain
CDDcd000181.53E-2545102No hitNo description
PRINTSPR003677.1E-64556IPR001471AP2/ERF domain
PfamPF008471.3E-64592IPR001471AP2/ERF domain
PRINTSPR003677.1E-682102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDDSVPTPLA LRKSPTSSSS AMVGVDGNHL MPAASTASLG KHPMYRGVRC RGVKWVSEIR  60
QPGKAKRIWL GTYHLPEMAA IAYDVASFAL RGVDAVLNFP DSVKSHPVPA STSPSDIQAA  120
AAAAANAFLQ KKNTVVAVDK ETKELAWEDE NHEFMDEDEV YNMPKFLENM AEAMLMSPPR  180
MNPAASDESP KGSDCDAILW NHDL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278525.18e-57PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9SJR04e-40ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0K9PTE01e-149A0A0K9PTE0_ZOSMR; Dehydration responsive element binding transcription factor 1B
STRINGXP_010278525.13e-56(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-41ERF family protein