PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma17g01020.1
Common NameZOSMA_17G01020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 251aa    MW: 28904.9 Da    PI: 10.0225
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma17g01020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.21.3e-1328932690
             FAR1 26 geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                     ++ ++ ++ Cskeg+ +  + ++ ++rr+++ +r+gC a++k+k+e  +++w v++++leHnH+l+
  Zosma17g01020.1 28 KNLVMGRLLCSKEGTVDLLHPSKLDKRRKNVFSRCGCCASIKIKREGmSEVWIVKHIVLEHNHPLT 93
                     45677899********999999999**********************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-102793IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVMRRKWVSP FVWVLLTIKP VRMTYGKKNL VMGRLLCSKE GTVDLLHPSK LDKRRKNVFS  60
RCGCCASIKI KREGMSEVWI VKHIVLEHNH PLTTSSKVRF LPINRSISST SRLLFQSLSE  120
VNVPVSQQTA YFSTQVGGIE HMGCTQLDIS NMCRDDHVDL KNYGVDLLVE EFEMKKSVQP  180
DFFYSIVKDS SGRLKHVFWV DSIMIQHFKL FGDTVTINTT YKTNVYSLIF RMFYDCLKMK  240
MLGFENGRPG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PRE00.0A0A0K9PRE0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-27FAR1-related sequence 5