PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma180g00230.1
Common NameZOSMA_180G00230
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26808.4 Da    PI: 5.1716
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma180g00230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.8e-203684149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ie +s  qv+fskR+  ++KKA+ELS+LC+++++vi+fs+ gk + +
  Zosma180g00230.1 36 KKIEKESSLQVSFSKRKSSLFKKASELSILCGVNISVIVFSPGGKAFSF 84
                      689*****************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-282887IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.2962888IPR002100Transcription factor, MADS-box
CDDcd002657.57E-342996No hitNo description
SuperFamilySSF554551.96E-2529100IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-173050IPR002100Transcription factor, MADS-box
PfamPF003191.5E-223784IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-175065IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-176586IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRPTNFLPFQ GSCNSIMMTT TTAKKKSLGR QKIPMKKIEK ESSLQVSFSK RKSSLFKKAS  60
ELSILCGVNI SVIVFSPGGK AFSFGHPSVE SVVNRYIDST ITTNHGGHGG GYSSTSSSHS  120
DHLTDYSDNR EYMNLATMLE EERRKKEEMQ KNGLNGWMDL VDMNIEDMGL QELQELKMKL  180
EDLKCNVSAE SAAAPPPLPI LESSENPVPS DEMNFQTGPF EDNLEEWFSG LPMPLPDYFF  240
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PT511e-178A0A0K9PT51_ZOSMR; Agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-20AGAMOUS-like 61