PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma180g00320.1
Common NameZOSMA_180G00320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 128aa    MW: 14604.2 Da    PI: 7.7061
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma180g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.25.5e-1352127376
              FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkw 76 
                       Y  YA ++GF+v + ++k +  ++e++ r+f Csk+g++ +++++   +e+++r+  ++r gC a++ +++++ +  w
  Zosma180g00320.1  52 YMGYAGNIGFNVHMGSTKMN--DHEMVGRRFLCSKQGYALSTDTAnnlNERKHRRIRNSRSGCLAMIYISLDRsTRLW 127
                       99*************98887..9999************99988887777888888899************99855555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1051126IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MHISTEQLQS HNVDQDNIHS EPNTETIGSS STPYIPEVGQ QFNSHDEARD AYMGYAGNIG  60
FNVHMGSTKM NDHEMVGRRF LCSKQGYALS TDTANNLNER KHRRIRNSRS GCLAMIYISL  120
DRSTRLWR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PR313e-92A0A0K9PR31_ZOSMR; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-11FAR1 family protein