PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma182g00050.1
Common NameZOSMA_182G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 343aa    MW: 39055.6 Da    PI: 7.2101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma182g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-131761348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +WT eEd +l d v+  G+++W +Ia+ +   Rt  qc+ rw++yl
  Zosma182g00050.1 17 SWTLEEDAILRDQVRVQGTENWPSIAASLK-DRTSRQCRRRWYTYL 61
                      5****************************9.*************97 PP
2Myb_DNA-binding452.5e-1467111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g W++eEd ll +a + +G++ W+ I++ +  gRt++ +k+r++++
  Zosma182g00050.1  67 KGGWSQEEDALLCEAQRIYGNK-WTEISKVVS-GRTDNAVKNRFNTL 111
                       688*******************.*********.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.6841261IPR017930Myb domain
SMARTSM007172.3E-101463IPR001005SANT/Myb domain
CDDcd001671.09E-111761No hitNo description
SuperFamilySSF466896.74E-2617108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-191869IPR009057Homeodomain-like
PfamPF139213.6E-151878No hitNo description
PROSITE profilePS5129420.20862116IPR017930Myb domain
SMARTSM007171.1E-1466114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-1970115IPR009057Homeodomain-like
CDDcd001678.00E-1170111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEMDSSSMSF HKPRIISWTL EEDAILRDQV RVQGTENWPS IAASLKDRTS RQCRRRWYTY  60
LNTECKKGGW SQEEDALLCE AQRIYGNKWT EISKVVSGRT DNAVKNRFNT LSKKRTKHTI  120
QDNENENYSL DCANKRIGVP NSFSASVESE LPTKKKIKGY IPILEKNNQS EIPKTLVPLS  180
LQSCSTRSSN DYQTDDMNKM SQSFSLNNSS SLYVHIRDNK EHPIETNCDQ ECSGNAFDRV  240
DHILEEEIYG LSSMHQGLLS PCRDESKISE NTTYGQHSSE YNSPFHTVSP FLSFADMIPS  300
PKFSASERRF LMDLFDTTSP SSKLSPKTSN EPSCKKQLLH SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-271811510107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PQS00.0A0A0K9PQS0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.12e-55myb domain protein 88