PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma182g00480.1

Common Name

ZOSMA_182G00480

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 296aa MW: 34025.3 Da PI: 9.2252

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma182g00480.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.1	1.1e-16	43	136	2	90
FAR1 2 fYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y YA+++ F +r ++k++ + ++ ++r++ Cskeg + + + +rr++a +r+gC a++k++ke +++w v++++ eHnH++ Zosma182g00480.1 43 HYYGYASKMSFFIRLGSTKYKtsndDGKKILVMRQLLCSKEGIVDLLHPPKLGKRRKNAISRCGCSASIKINKEGmSEVWIVKHIVFEHNHPF 135 6999********9887766454334456789*******999988899******************9*************98 PP FAR1 90 a 90 + Zosma182g00480.1 136 T 136 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-13	43	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MLLLVFFVPK QSTDTNSSSD NVKLNSPPTF DQFYSSYSDA LDHYYGYASK MSFFIRLGST 60 KYKTSNDDGK KILVMRQLLC SKEGIVDLLH PPKLGKRRKN AISRCGCSAS IKINKEGMSE 120 VWIVKHIVFE HNHPFTTPLK VRFLPINRSI SSTSRLLSQS FGEVNVPVSQ QTAYFYLKFF 180 GGIEHMGCTQ LDILNMCRDD RVDLKNYDVD LLVEEFELKK FVQPDFFYSI VKDSSGRLKH 240 VFWVDSVMIQ YFKLFGDAVT FDTTYKTNVY SLIFGMFCGV NHHRKIVIFE SAFLR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	97	PKLGKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PSY6	0.0	A0A0K9PSY6_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-31	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma182g00480.1