PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma188g00270.1
Common NameZOSMA_188G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 263aa    MW: 30071.3 Da    PI: 8.4553
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma188g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.72.5e-15698390
              FAR1  3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      Y ++A+++GFsvr  ++++     + ++  +++++ Csk+g+++     t+ +rr++ ++r+gC  ++k k+ + ++kw+ ++++l+HnH+++
  Zosma188g00270.1  6 YYDFASSAGFSVRLGSTQNIldkeTGQKILVMKRLLCSKQGSPNLILPLTNGTRRKNGVSRCGCLESIKFKRIDrSDKWVTDSVNLDHNHPFT 98
                      999**********9998876664345556789************9999999**********************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-12698IPR004330FAR1 DNA binding domain
PfamPF105511.1E-6220255IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVVQSYYDFA SSAGFSVRLG STQNILDKET GQKILVMKRL LCSKQGSPNL ILPLTNGTRR  60
KNGVSRCGCL ESIKFKRIDR SDKWVTDSVN LDHNHPFTTL SKIRYLSINR SISHTSKILF  120
SSLADVNVPV SQQTADFSNQ LGGPENMGCM TLDINNMVRD DRIDLKNYDV DLIVEDFQMK  180
KLENVQFFYD LVKDDEGRLK HLFWADPTMI ENYKLFEDSV TFDTTYKTNV YSMVFGMFCG  240
VNHHRRTTIF GSAFLRYFVN SL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PSE10.0A0A0K9PSE1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-33FAR1-related sequence 5