PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma189g00260.1

Common Name

ZOSMA_189G00260

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 785aa MW: 86587.5 Da PI: 6.5049

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma189g00260.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.7e-21	106	161	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q++eLe++F+++++p+ ++r+eL+k+l L+ rqVk+WFqNrR+++k Zosma189g00260.1 106 RKRYHRHTPQQIQELENVFKECPHPDDKQRTELSKRLCLENRQVKFWFQNRRTQMK 161 789999***********************************************999 PP
2	START	170.2	1.4e-53	286	507	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la++a++el k++ ++p W + s e n++++l+ f++ + + +ea r+sg+v+ ++ lv +l+d +W + +a+t Zosma189g00260.1 286 LALSAMNELEKLVHMKDPIWISHSesgkETINYEKYLRVFPRIIGekpigFVSEATRESGNVIINSSALVDTLMDAD-RWCDIFScmiaRAST 377 6899******************999888899***9977799**************************.88777777777 PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 ++vissg galqlm ae+q+lsplvp R+ f+R+++q+ +g w++vdvS+d + ++ ++ +++lpSg++++++ ng+skvtw+ Zosma189g00260.1 378 TDVISSGmagtrnGALQLMHAEFQVLSPLVPiREANFLRFCKQHADGLWAVVDVSIDGIINGNN--TFMSCRRLPSGCVVQDLCNGYSKVTWI 468 *******************************************************99986..9********************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ehv+++++++h+l+r+l++sg+ ga++w++tl+rqce+ Zosma189g00260.1 469 EHVEYDESTVHQLYRPLLRSGMGLGAQRWLSTLRRQCEC 507 ***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-21	89	163	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-22	96	163	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.831	103	163	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	104	167	IPR001356	Homeobox domain
CDD	cd00086	5.74E-19	105	163	No hit	No description
Pfam	PF00046	1.6E-18	106	161	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	138	161	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.272	276	510	IPR002913	START domain
SuperFamily	SSF55961	3.3E-31	284	507	No hit	No description
CDD	cd08875	1.05E-109	284	506	No hit	No description
SMART	SM00234	3.3E-34	285	507	IPR002913	START domain
Pfam	PF01852	1.3E-46	286	507	IPR002913	START domain
SuperFamily	SSF55961	1.43E-20	535	772	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MSFEGFHDKN SACQRVTEEA PAEPAMPSAT GVISHTLLSS TGLSLGLKTN VDGGYGSGMM 60 MAARIGSREF HGSCAENECR SESDNYLDGV SGEDFDPENP KGNKKRKRYH RHTPQQIQEL 120 ENVFKECPHP DDKQRTELSK RLCLENRQVK FWFQNRRTQM KTQLERHENS LLRLENDKLR 180 SENMSVNNAV RNPICTNCGG LAMPTELSLE EHHLRIENAR LKDELERVCC LTGRFLDRPL 240 FPSIPPNVPN SSLELAVGGG NAFDGFGSLP TVTNTTSSRV SVHLDLALSA MNELEKLVHM 300 KDPIWISHSE SGKETINYEK YLRVFPRIIG EKPIGFVSEA TRESGNVIIN SSALVDTLMD 360 ADRWCDIFSC MIARASTTDV ISSGMAGTRN GALQLMHAEF QVLSPLVPIR EANFLRFCKQ 420 HADGLWAVVD VSIDGIINGN NTFMSCRRLP SGCVVQDLCN GYSKVTWIEH VEYDESTVHQ 480 LYRPLLRSGM GLGAQRWLST LRRQCECLGI LTSPSAPSRY LTNITAIGRR SMLKLAQRMT 540 DNFCAGVCPS TVHQWNILRV GTVDEDVRVM TRKSVENPGE PPGVVLSAAT SVWLPVSTQR 600 LFDFLRDERL RSEWDILSNG GPMQEMAHIT KGQDVGNCVS LLRSSALIRN QSSMLILQET 660 CTDPSASLVV YAPVDIPAMQ LVMNGGDSAY VALLPSGFAI VPVSMSNSNS IEKSGVSDAI 720 DDDIHARRAH EGGSLLTVAF QILVNSLPTA KLTVESVETV NNLISCTVQK IKASLQCENI 780 RPAS*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MSFEGFHDKN SACQRVTEEA PAEPAMPSAT GVISHTLLSS TGLSLGLKTN VDGGYGSGMM  60
MAARIGSREF HGSCAENECR SESDNYLDGV SGEDFDPENP KGNKKRKRYH RHTPQQIQEL  120
ENVFKECPHP DDKQRTELSK RLCLENRQVK FWFQNRRTQM KTQLERHENS LLRLENDKLR  180
SENMSVNNAV RNPICTNCGG LAMPTELSLE EHHLRIENAR LKDELERVCC LTGRFLDRPL  240
FPSIPPNVPN SSLELAVGGG NAFDGFGSLP TVTNTTSSRV SVHLDLALSA MNELEKLVHM  300
KDPIWISHSE SGKETINYEK YLRVFPRIIG EKPIGFVSEA TRESGNVIIN SSALVDTLMD  360
ADRWCDIFSC MIARASTTDV ISSGMAGTRN GALQLMHAEF QVLSPLVPIR EANFLRFCKQ  420
HADGLWAVVD VSIDGIINGN NTFMSCRRLP SGCVVQDLCN GYSKVTWIEH VEYDESTVHQ  480
LYRPLLRSGM GLGAQRWLST LRRQCECLGI LTSPSAPSRY LTNITAIGRR SMLKLAQRMT  540
DNFCAGVCPS TVHQWNILRV GTVDEDVRVM TRKSVENPGE PPGVVLSAAT SVWLPVSTQR  600
LFDFLRDERL RSEWDILSNG GPMQEMAHIT KGQDVGNCVS LLRSSALIRN QSSMLILQET  660
CTDPSASLVV YAPVDIPAMQ LVMNGGDSAY VALLPSGFAI VPVSMSNSNS IEKSGVSDAI  720
DDDIHARRAH EGGSLLTVAF QILVNSLPTA KLTVESVETV NNLISCTVQK IKASLQCENI  780
RPAS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022757220.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0K9PS53	0.0	A0A0K9PS53_ZOSMR; Homeobox-leucine zipper protein 3
STRING	XP_004144982.1	0.0	(Cucumis sativus)
STRING	XP_004168157.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Zosma189g00260.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]