PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma189g00280.1
Common NameZOSMA_189G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 399aa    MW: 45175.3 Da    PI: 8.6282
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma189g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.45.5e-14126218390
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y ++A+ +GFsv   ++k+     + ++  +++++ Csk+g+ +     t+ +rr++ ++r++C a++k k+ + +++w+ ++++ +HnH+++
  Zosma189g00280.1 126 YYDFASAMGFSVHLGSTKNIldkeSCQKILVMKRLLCSKQGSLSLILPPTNGTRRKNGVSRCDCLASIKFKRINrSDNWVTETVNFDHNHSFT 218
                       999*********99988766554466777889************9999999*********************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-11126218IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSYGTVKTPN SLNFQFNSPH CQTNVNPTAC NVNVSTSLDS DVVCSTFFDS EFVQSTSADI  60
RQSSAEIRTT SANLSCGTAK TPDNYFKGKS SSPDHQNASS SYSKCNKPCP IVGQVFPSYE  120
ITVQSYYDFA SAMGFSVHLG STKNILDKES CQKILVMKRL LCSKQGSLSL ILPPTNGTRR  180
KNGVSRCDCL ASIKFKRINR SDNWVTETVN FDHNHSFTTP SKIRYLPINR SISHTSKLLF  240
SSLAEVNVPV SQQAAYFSNQ LSGVQNMGCM KLDINNMVRD DRIDLKNYDV DLIVKEFKIK  300
KLENKDFFYD LVKDDEGRLK HLFWVDPTMI ENYKLFADSV TFDTTYKTNV YFMVFDMFCG  360
VNHHRKTTIF GSAFLRYFVY TFILTFSLSF TFNPLFLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PS730.0A0A0K9PS73_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-31FAR1-related sequence 5