PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma189g00360.1
Common NameZOSMA_189G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 242aa    MW: 26478.8 Da    PI: 5.1958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma189g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-0971119354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +++  rE+ RRdr+N++f eL  +l +    + +K +Ka iL  A + + +L
  Zosma189g00360.1  71 KSKACREKMRRDRLNDKFGELSAVLDPG---KPPKSDKAVILVDAARALAQL 119
                       67889********************998...89***********99988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-1162134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.57368119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-669124No hitNo description
PfamPF000101.5E-672119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-574125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1076145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGSNSIDYGW IDDVGGGSDG EYCWAIDGLS DLPPPSCLKI DHAYGGDADI CCPQQTDLGK  60
RSRNEVCARP KSKACREKMR RDRLNDKFGE LSAVLDPGKP PKSDKAVILV DAARALAQLR  120
SEAEELKDAN EKLQDTIKDL KEEKNELRDD KLKLKADKDR LEQQMKIMSM PSPGFIAHPA  180
AAYHAAAAAF ASQNQVPANK NTPYLPYTAA PSTWQWLLPG QWLPPAACDI REDQNNVSPT  240
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940314.16e-80transcription factor ILR3 isoform X1
TrEMBLA0A0K9PS641e-177A0A0K9PS64_ZOSMR; Transcription factor ILR3
STRINGXP_008803703.19e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-44bHLH family protein