PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma18g00300.1
Common NameZOSMA_18G00300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 185aa    MW: 20597.7 Da    PI: 7.4974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma18g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C+++F ++  L  H++ H
  Zosma18g00300.1 23 YSCQYCDRRFHSSQALGGHQNGH 45
                     99**************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-51949IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.53E-71949No hitNo description
PfamPF139122.6E-62242IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.972350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MADEEMNRSI LCRNMNQAGK KVYSCQYCDR RFHSSQALGG HQNGHKQERL DNRRAQKDLE  60
GQLPEQAFYN YPYYSSSSYR YQPYQPSYRF NFVRPSNFFS GPSSLLAAHT PFASALRSDR  120
QLPLPLPLPS WMANNRNMEG NVNVNANLNG IAAENVAANG AGNGVGNGED EQVDDGGLDL  180
TLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PPD81e-134A0A0K9PPD8_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-12zinc finger protein 4