PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma18g00430.1
Common NameZOSMA_18G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 166aa    MW: 18579.2 Da    PI: 8.7248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma18g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-102666954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r RR+ri ++f  Lr+l+P        K++ +++Le+A++Y+k L
  Zosma18g00430.1 26 ARERRHRISDRFKILRSLVPGG-----SKMDTVSMLEEAIHYVKFL 66
                     699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.5671766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-142281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.64E-142371No hitNo description
Gene3DG3DSA:4.10.280.104.0E-132375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-122372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-82666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVRRNNRRRG NGGGVKLSTD PQSVAARERR HRISDRFKIL RSLVPGGSKM DTVSMLEEAI  60
HYVKFLKMQI SIHQALMMNL PDEHFCTPPT PVLLPVSNLQ ISTIDNSLAA AFNTTYSSSS  120
VVLPTDYSSL PPLPNQDCPW PFQQEDEIFF PQPLSANFYH PSINP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019235.12e-38PREDICTED: transcription factor bHLH140-like
TrEMBLA0A0K9PRV21e-119A0A0K9PRV2_ZOSMR; Uncharacterized protein
STRINGPOPTR_0006s10350.18e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.18e-29APRATAXIN-like