PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma18g01100.1

Common Name

ZOSMA_18G01100

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 416aa MW: 45717.2 Da PI: 6.2839

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma18g01100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	6.8e-39	101	161	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rnvPvG+grr+nk+s+ Zosma18g01100.1 101 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCRSCQRYWTAGGTMRNVPVGAGRRRNKHST 161 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	92	158	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.835	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MADPSIKLFG RTIADYSDSP AFLIGDACGC DVKGISGTDL VNKESKEFVH CGEDAATSGV 60 DIGQSDNHRV QIHHHSLDGM AVSNNQVESG VSEKEKTLKK PDKILPCPRC NSMDTKFCYY 120 NNYNVNQPRH FCRSCQRYWT AGGTMRNVPV GAGRRRNKHS TQQLPICSNS ILTSPVDASV 180 TVHDHVCESM VVEALVGDQE SVGEVNPMMR CEENGGGEPS FPSEQVPENL DSVDKNGNTM 240 ADFMSPLQCY PPPPWSYPWN PLWNNNAPVV TNPGFCPTPI PFPFFWGCTA NWPPPNGVWT 300 MPSWVGVGSS GLGNNCSQLG KHSRDDDEKE EEEKTEKKSL WIPKTIRIDD PDEAAKSSIW 360 ATLGIKPYRN KLGRKPSIFK PLHPNKSRQT EATTQAGFLA NPAALSRSQT FQEGT*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MADPSIKLFG RTIADYSDSP AFLIGDACGC DVKGISGTDL VNKESKEFVH CGEDAATSGV  60
DIGQSDNHRV QIHHHSLDGM AVSNNQVESG VSEKEKTLKK PDKILPCPRC NSMDTKFCYY  120
NNYNVNQPRH FCRSCQRYWT AGGTMRNVPV GAGRRRNKHS TQQLPICSNS ILTSPVDASV  180
TVHDHVCESM VVEALVGDQE SVGEVNPMMR CEENGGGEPS FPSEQVPENL DSVDKNGNTM  240
ADFMSPLQCY PPPPWSYPWN PLWNNNAPVV TNPGFCPTPI PFPFFWGCTA NWPPPNGVWT  300
MPSWVGVGSS GLGNNCSQLG KHSRDDDEKE EEEKTEKKSL WIPKTIRIDD PDEAAKSSIW  360
ATLGIKPYRN KLGRKPSIFK PLHPNKSRQT EATTQAGFLA NPAALSRSQT FQEGT*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922885.1	7e-95	cyclic dof factor 1
TrEMBL	A0A0K9PS15	0.0	A0A0K9PS15_ZOSMR; Cyclic dof factor 1
STRING	XP_008793337.1	4e-94	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-57	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Zosma18g01100.1