PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma18g01140.1
Common NameZOSMA_18G01140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 219aa    MW: 24168.4 Da    PI: 6.908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma18g01140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-124288354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h e+E+rRR+ri+s +++Lr ll  +     +K +Ka+ L kAv ++++L
  Zosma18g01140.1 42 RNHREAEKRRRERIKSHLDRLRHLLSCD-----PKIDKATLLAKAVAHVRDL 88
                     78***********************997.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.173988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-94288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-124296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-134395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-104594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.6E-5118185No hitNo description
CDDcd048730.00113122165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MYSDVYGRLG STSAAGGGGF MAAALSAATS TIAVDRAGIA SRNHREAEKR RRERIKSHLD  60
RLRHLLSCDP KIDKATLLAK AVAHVRDLKQ QTSQIPDVDR FPTEIDSITI STTADRSNIL  120
KVTLCCDDRP RLFPDLIDTL KSLRLRTVRA ELATVCGRVR CVFLVAKETE DEEEEEEEVL  180
REALKAVVEK DVTGAGGSSV GCDRMKRRRV VERDDDDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271836.17e-59PREDICTED: transcription factor bHLH106-like
SwissprotO806742e-44BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0K9PPW81e-153A0A0K9PPW8_ZOSMR; Uncharacterized protein
STRINGXP_010271836.13e-58(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]