PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma190g00030.1

Common Name

ZOSMA_190G00030

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 110aa MW: 12413.5 Da PI: 9.9967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma190g00030.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.9	1e-10	10	51	50	90
FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++rr++ ++r+gC a++k+k+ + ++ w v++++leHnH+l+ Zosma190g00030.1 10 SKRRKNGVSRCGCCASIKMKRIDlSEDWIVKDIVLEHNHPLT 51 58999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-8	10	51	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MLTIHPSLIS KRRKNGVSRC GCCASIKMKR IDLSEDWIVK DIVLEHNHPL TTPSKLRYLP 60 INRCISLASR LLYNFLSDVN VPVSQQTAYF SSQVGGIETW VARNWISII*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PPA3	1e-74	A0A0K9PPA3_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-08	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Zosma190g00030.1