PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma196g00250.1
Common NameZOSMA_196G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 220aa    MW: 24058.8 Da    PI: 5.6244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma196g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-2056105255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g+W+AeIrdp+    + +r++lg+f t+e Aa+a++aa+ +++g
  Zosma196g00250.1  56 KYRGVRKRP-WGKWAAEIRDPK----KaARVWLGTFTTPEAAARAYDAAAIRFRG 105
                       8********.**********94....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-3656119IPR001471AP2/ERF domain
CDDcd000184.26E-2356115No hitNo description
Gene3DG3DSA:3.30.730.102.8E-3256114IPR001471AP2/ERF domain
PfamPF008472.5E-1356105IPR001471AP2/ERF domain
PROSITE profilePS5103225.63356113IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2256115IPR016177DNA-binding domain
PRINTSPR003675.2E-115768IPR001471AP2/ERF domain
PRINTSPR003675.2E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSIPESKYSF GHDEEMAVIV SALTHVLSPT SEKPEPESSG SSSSTSEATV GTAENKYRGV  60
RKRPWGKWAA EIRDPKKAAR VWLGTFTTPE AAARAYDAAA IRFRGNRAKL NFPENVRRLT  120
PTPPPIQSCP PPLPSMPSMP PSMYDDWHFA TPLPDFHDNT PMSLPFPSSD APFYSTESQI  180
LDPPMVWEQF QLGGGTSSAS TMLSFTDGSS SSDQFGHWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2257116363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2257116666ATERF1
3gcc_A6e-2257116666ATERF1
5wx9_A9e-2250113872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073144.17e-33ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0K9PNY51e-158A0A0K9PNY5_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-24related to AP2 6