PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma197g00190.1

Common Name

ZOSMA_197G00190

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 198aa MW: 22718.9 Da PI: 9.843

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma197g00190.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.3	9.1e-17	3	89	6	90
FAR1 6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 YA ++G +vr+ ++k + ++e++ +++ Csk+g++ ++ ++ +ek++r+ +++r gC a++ +++++ ++ w+v ++ ++HnH+l+ Zosma197g00190.1 3 YAGNIGVHVRMGSTKIN--DQEMVGQRMLCSKQGYAPSTATEnivNEKKQRRIKNSRSGCLAMIYISLDRsTQLWRVVNFIEDHNHPLV 89 **********98887..9999********9999888898899999999**********9999*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-14	2	89	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGYAGNIGVH VRMGSTKIND QEMVGQRMLC SKQGYAPSTA TENIVNEKKQ RRIKNSRSGC 60 LAMIYISLDR STQLWRVVNF IEDHNHPLVT PSKRRYLPLN RVITPLSRAL FQSLNTSNIS 120 PSDQYCVVAQ EAGGFDHIQF TPSNLSNMRR DDRCNIIQRD ADLLIQLFVE RRNKSFDFFS 180 FTRLDNGNFY VIYVIQF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PNV8	1e-145	A0A0K9PNV8_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma197g00190.1