PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma198g00250.1
Common NameZOSMA_198G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 188aa    MW: 20986.7 Da    PI: 9.4985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma198g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd+ l  +v++ G g +W + +++ g++R++k+c++rw++yl
  Zosma198g00250.1 14 RGSWSPEEDKALRTYVEKNGIGgNWISLPQKAGLTRCGKSCRLRWLNYL 62
                      89******************999************************97 PP
2Myb_DNA-binding45.61.6e-1469111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T+eEd  ++ + k+lG++ W+ Ia+ ++ gRt++++k++w++
  Zosma198g00250.1  69 GGFTEEEDIFILTLYKRLGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.539962IPR017930Myb domain
SuperFamilySSF466891.88E-2812109IPR009057Homeodomain-like
SMARTSM007171.2E-101364IPR001005SANT/Myb domain
PfamPF002491.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-221569IPR009057Homeodomain-like
CDDcd001676.04E-81662No hitNo description
PROSITE profilePS5129421.84863117IPR017930Myb domain
SMARTSM007172.3E-1367115IPR001005SANT/Myb domain
PfamPF002492.4E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2370117IPR009057Homeodomain-like
CDDcd001671.71E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGKATCCDSS KVKRGSWSPE EDKALRTYVE KNGIGGNWIS LPQKAGLTRC GKSCRLRWLN  60
YLRPDIRHGG FTEEEDIFIL TLYKRLGSRW SVIASQLPGR TDNDVKNYWN TKLKKKVLGS  120
SSKHKHKHTT VGISSNNSSN SHESVTVERT TVMAIDNPAG VGSADELLTM DFGQWISSDL  180
FNWCDFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-25911722128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508343.15e-70transcription factor MYB36
SwissprotQ9FKL28e-65MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0K9PNK11e-136A0A0K9PNK1_ZOSMR; Myb domain protein 4
STRINGERN152454e-69(Amborella trichopoda)
STRINGXP_007154791.17e-69(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-60myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]