PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma199g00100.1

Common Name

ZOSMA_199G00100

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 24342.4 Da PI: 9.6676

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma199g00100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.9e-17	73	127	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++tkeq + Lee F++n++++ +++e L kl+L rqV vWFqNrRa+ k+ Zosma199g00100.1 73 KKLRLTKEQSRLLEESFKQNQTLNLKQKETLGLKLKLRPRQVEVWFQNRRARTKQ 127 67789***********************************************996 PP
2	HD-ZIP_I/II	107	1.4e-34	73	160	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rl+keq++lLEesF+++++L+ ++K++l +L+l+prqv+vWFqnrRARtk+kq+ ++y++L++ y +l+een+rL+keve Lr + Zosma199g00100.1 73 KKLRLTKEQSRLLEESFKQNQTLNLKQKETLGLKLKLRPRQVEVWFQNRRARTKQKQTGMEYDQLRQFYGSLTEENRRLQKEVEYLR-A 160 9************************************************************************************99.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-16	62	127	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-19	62	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.151	68	128	IPR001356	Homeobox domain
SMART	SM00389	4.5E-14	70	132	IPR001356	Homeobox domain
CDD	cd00086	1.11E-13	71	129	No hit	No description
Pfam	PF00046	6.4E-15	72	127	IPR001356	Homeobox domain
SMART	SM00340	6.2E-10	128	171	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MNDPSCLELT MAVPGLSTSS GSEGGGGGFN QFNNGMRDLD MNRPASASGF EEDYQTVVVE 60 NGHDISESSN RPKKLRLTKE QSRLLEESFK QNQTLNLKQK ETLGLKLKLR PRQVEVWFQN 120 RRARTKQKQT GMEYDQLRQF YGSLTEENRR LQKEVEYLRA LHTHYEIPPS SLTMCPRCEK 180 VTTTAAAAAT MGKQIQNKSA GATTNFVGSR RPSSATC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	128	RRARTKQKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924194.1	4e-68	LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX3
Swissprot	Q0JKX1	6e-64	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	6e-64	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A0K9PNC8	1e-161	A0A0K9PNC8_ZOSMR; Homeobox-leucine zipper protein HOX3
STRING	XP_008800935.1	2e-65	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6826	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	7e-48	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Phytozome	Zosma199g00100.1