PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g00150.1
Common NameZOSMA_19G00150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 109aa    MW: 12555.3 Da    PI: 10.4303
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g00150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.94.6e-333891255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWtp+LH++Fv+a+e+LGG+++AtPk +l+lm+v+gLt++h+kSHLQ+YR+
  Zosma19g00150.1 38 PRLRWTPDLHRCFVSAIEKLGGQDNATPKLVLQLMEVEGLTISHIKSHLQMYRS 91
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5983494IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-323494IPR009057Homeodomain-like
SuperFamilySSF466899.86E-173694IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-253892IPR006447Myb domain, plants
PfamPF002492.8E-93990IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEDQKKNKKK KMCKEAREDQ SSTGKNGGVR QYIRSKVPRL RWTPDLHRCF VSAIEKLGGQ  60
DNATPKLVLQ LMEVEGLTIS HIKSHLQMYR STRNDMNRQA DQTRDDQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-223993458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-223993458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-223993357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-223993357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-223993357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-223993357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-223993458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-223993458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-223993458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-223993458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-223993458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-223993458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574578.13e-44PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D91e-31MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A0K9PMY62e-75A0A0K9PMY6_ZOSMR; MYB transcription factor-like
STRINGXP_008805079.13e-42(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.18e-35G2-like family protein