PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma19g00170.1

Common Name

ZOSMA_19G00170

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 596aa MW: 64338.2 Da PI: 9.6251

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma19g00170.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Zosma19g00170.1 84 FICEVCKKGFQREQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	12.5	0.00045	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Zosma19g00170.1 160 WKCDKCSKRYAVQSDWKAHSKTC 182 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.9E-5	83	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.2E-7	83	106	No hit	No description
PROSITE profile	PS50157	10.679	84	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	125	155	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-4	148	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.2E-7	155	180	No hit	No description
SMART	SM00355	140	160	180	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MAAPSSSSPF FGIREDDLRT NIHTHMKQQQ ISEMVGPGPA SSTGGAPPSG PLMAKKKRNL 60 PGTPNPDAEV VALSPKTLMA TNRFICEVCK KGFQREQNLQ LHRRGHNLPW KLRQKSTKEV 120 KRKVYLCPEP TCVHHDRSRA LGDLTGIKKH FSRKHGEKKW KCDKCSKRYA VQSDWKAHSK 180 TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARIPT GMGINSTYLY LNNGNGNGNG 240 NGISTVSLAN INQMNTQRDQ NHASNDVLRL GSRSGSQFGH LVGSNSPTVQ SGPSSNGFFF 300 GQHHQQDHHF QDDHPLLHNK PFHGGLMQPP DLQASSSNAH AGATNLFNLG FFSNSTRSSS 360 SSQSNHLLMS DQFNSGSGSV NNEQGTLFSG SLIGAGGGDN NIYSTSLQND SLLPQMSATA 420 LLQKAAQMGS TTSAGITPSS LPRSTKPSEL SMTHFAGTGD HGSIRSQIEN ENNFQDLMNS 480 LANGNAASMF GVANSGTTTA VFGNGGYEPN RTLGFDGYSS NFGEVTDDTK LHQSMNPARN 540 MAGGGSDGLT RDFLGVAGMM RRDQQHNHHG LDIGSFDSKL KSNTNTRTFQ GGNLQ*

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MAAPSSSSPF FGIREDDLRT NIHTHMKQQQ ISEMVGPGPA SSTGGAPPSG PLMAKKKRNL  60
PGTPNPDAEV VALSPKTLMA TNRFICEVCK KGFQREQNLQ LHRRGHNLPW KLRQKSTKEV  120
KRKVYLCPEP TCVHHDRSRA LGDLTGIKKH FSRKHGEKKW KCDKCSKRYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARIPT GMGINSTYLY LNNGNGNGNG  240
NGISTVSLAN INQMNTQRDQ NHASNDVLRL GSRSGSQFGH LVGSNSPTVQ SGPSSNGFFF  300
GQHHQQDHHF QDDHPLLHNK PFHGGLMQPP DLQASSSNAH AGATNLFNLG FFSNSTRSSS  360
SSQSNHLLMS DQFNSGSGSV NNEQGTLFSG SLIGAGGGDN NIYSTSLQND SLLPQMSATA  420
LLQKAAQMGS TTSAGITPSS LPRSTKPSEL SMTHFAGTGD HGSIRSQIEN ENNFQDLMNS  480
LANGNAASMF GVANSGTTTA VFGNGGYEPN RTLGFDGYSS NFGEVTDDTK LHQSMNPARN  540
MAGGGSDGLT RDFLGVAGMM RRDQQHNHHG LDIGSFDSKL KSNTNTRTFQ GGNLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	156	220	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-34	156	220	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270755.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_010270757.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-120	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A0K9PQB0	0.0	A0A0K9PQB0_ZOSMR; Putative Zinc finger protein
STRING	XP_010270754.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-113	indeterminate(ID)-domain 4

Link Out ? help Back to Top
Phytozome	Zosma19g00170.1

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]