PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g00210.1
Common NameZOSMA_19G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 262aa    MW: 29931.1 Da    PI: 10.3923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17143190253
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+ ++ a++++
  Zosma19g00210.1 143 VYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARVHDVAALSI 190
                      7*****998.**********843...6*********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.812143200IPR001471AP2/ERF domain
SMARTSM003804.2E-29143206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-28143201IPR001471AP2/ERF domain
PfamPF008471.2E-10143190IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-20143202IPR016177DNA-binding domain
PRINTSPR003671.2E-9144155IPR001471AP2/ERF domain
CDDcd000186.90E-28144202No hitNo description
PRINTSPR003671.2E-9166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRMHWTPSHK NSDISNFLCS PEAVSLICST HLTNRDREDG PKIRQSPREG GDRSPTSDPW  60
RERSTLLRRL VSDYTPEQKG AILFPLTSDV PHYQRLDDRK RYQISIAKQL IQEGSDSWNT  120
ISGKDLNHAP LLVKINETLV HKVYRGVRMR NWGKWVSEIR EPRKKSRIWL GTFPTPEMAA  180
RVHDVAALSI KDDVAFLNFP ISSTFFHDPL LSCLVTCKKQ PRGVHGRQST LDFVFVVDGD  240
GRTFRGTGSD RQIAKFGFFR V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151412001272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PN870.0A0A0K9PN87_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-34ERF family protein