PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g01070.1
Common NameZOSMA_19G01070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family YABBY
Protein Properties Length: 145aa    MW: 16209.7 Da    PI: 8.4996
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g01070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY64.44.5e-201262453
            YABBY  4 fssseqvCyvqCnfCntilavsvPsts.lfkvvtvrCGhCtsllsvnlaka 53
                     ++  +q+CyvqC+fCntil+vsvP +  +++vvtvrCGhC  llsv+ ++ 
  Zosma19g01070.1 12 QDHKNQLCYVQCSFCNTILLVSVPCKNlMVSVVTVRCGHCQGLLSVDFETE 62
                     56789*******************8651679***************98875 PP
2YABBY88.22.2e-277914099160
            YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                      ++l e+ed  ++ +  v++PPekr+r+Psayn+fikeei+rika+ P+++h+eafs+aakn 
  Zosma19g01070.1  79 FTLIEKEDIPTSAAVVVNKPPEKRRRAPSAYNCFIKEEIKRIKAEHPSVTHKEAFSTAAKNV 140
                      44444455555556679********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-181568IPR006780YABBY protein
PfamPF046908.2E-2588141IPR006780YABBY protein
SuperFamilySSF470952.62E-795137IPR009071High mobility group box domain
CDDcd000845.69E-5103131No hitNo description
Gene3DG3DSA:1.10.30.101.0E-4103132IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MSNSMATTTP FQDHKNQLCY VQCSFCNTIL LVSVPCKNLM VSVVTVRCGH CQGLLSVDFE  60
TEPSFVPLHF LASLHRDNFT LIEKEDIPTS AAVVVNKPPE KRRRAPSAYN CFIKEEIKRI  120
KAEHPSVTHK EAFSTAAKNV HKYT*
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344732.13e-47protein YABBY 8
SwissprotQ9LDT33e-36YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A0K9PNH11e-102A0A0K9PNH1_ZOSMR; Crabs claw
STRINGXP_008389678.13e-46(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-38YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]