PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma19g01250.1

Common Name

ZOSMA_19G01250

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 802aa MW: 87637.7 Da PI: 5.9381

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma19g01250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.7e-20	126	181	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R+++k Zosma19g01250.1 126 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMK 181 688999***********************************************999 PP
2	START	206.5	1e-64	308	530	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela +a++elv++a+ +ep+W +s e +n++e+ ++f+++ + ++ea+r + vv+m++ +lve+l+d++ qW+ + ka Zosma19g01250.1 308 ELAVAAMEELVRMAQIGEPLWLQSGtdhsstELLNEEEYFRTFPRGIGprpygLKSEASRQTSVVIMNHNNLVEILMDVN-QWSALFCsivsKA 400 57899*****************999999999********999****************************.999988888 PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 t+ev+s+g galq+m++e q++splvp Rd++fvRy++q+g g+w++vdvS++s +++p v + +++pSg+li++++ng+skvtw Zosma19g01250.1 401 ITIEVLSTGiagnynGALQVMSSEVQVPSPLVPtRDSYFVRYCKQHGPGTWAVVDVSLESLRPNP----VLKNRKRPSGCLIQEMPNGYSKVTW 490 ************************************************************9....7999***************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vehv++++r++ +++++lv+sgla+gak+w+atl+rqce+ Zosma19g01250.1 491 VEHVEVDDRSVNEIYKPLVNSGLAFGAKRWLATLDRQCER 530 ************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-22	108	181	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.13E-19	113	183	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	123	183	IPR001356	Homeobox domain
SMART	SM00389	4.3E-19	124	187	IPR001356	Homeobox domain
CDD	cd00086	3.47E-19	126	184	No hit	No description
Pfam	PF00046	1.2E-17	126	181	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	158	181	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.28	299	533	IPR002913	START domain
SuperFamily	SSF55961	9.48E-35	302	532	No hit	No description
CDD	cd08875	7.78E-122	303	529	No hit	No description
SMART	SM00234	1.0E-61	308	530	IPR002913	START domain
Pfam	PF01852	3.9E-54	309	530	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.6E-5	374	529	IPR023393	START-like domain
SuperFamily	SSF55961	2.11E-23	550	790	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0009913	Biological Process	epidermal cell differentiation
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0048825	Biological Process	cotyledon development
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MIPGRHLPSM MGRRTSGTGF GTTSSGLMLG QTDLLFSLTG RDMSGKDGEN LMNGQQQQEL 60 NHEAELNHSL NHQSVSQSLN QTNTEGLTEM RRIVGDDEFD SKSGSDNLEG GSGDEALDPN 120 QRPTKKKRYH RHTQHQIQEM EAFFKECPHP DDKQRKELSR ELNLEPLQVK FWFQNKRTQM 180 KTQHERHENT QLRTENDKLR AENMRYKEAL SNSSCPNCGG PAALGEMSFD EQHLRIENAR 240 LREEIDRISG MSAKFVGKTM QSYPFMPQQL PSRTSIDVGG SGMVGELFGG GGVHVQHNEV 300 VDKPVVIELA VAAMEELVRM AQIGEPLWLQ SGTDHSSTEL LNEEEYFRTF PRGIGPRPYG 360 LKSEASRQTS VVIMNHNNLV EILMDVNQWS ALFCSIVSKA ITIEVLSTGI AGNYNGALQV 420 MSSEVQVPSP LVPTRDSYFV RYCKQHGPGT WAVVDVSLES LRPNPVLKNR KRPSGCLIQE 480 MPNGYSKVTW VEHVEVDDRS VNEIYKPLVN SGLAFGAKRW LATLDRQCER LASSMATNVP 540 AGDIGVITSQ EGRKSMLKLA ERMVMSFCNG VSASTTHQWT TLSGSGAEDV RVMTRKSIDD 600 PGRPPGIVLS AATSFWLPIP PARVFDFLRD ENSRNEWDIL SNGGVVQEMA HIANGREQGN 660 CVSLLRVNSA SSNQSNMLIL QESCTDSTGS FVIYAPVDIV AMNVVLNGGD PDYVALLPSG 720 FAVLPDGPLQ NGGGGVVNNG DVMGNVGSNN GGSLLTVAFQ ILVDSAPTAK LSLGSVATVN 780 SLISCTVERI KGALSGGDTS R*

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MIPGRHLPSM MGRRTSGTGF GTTSSGLMLG QTDLLFSLTG RDMSGKDGEN LMNGQQQQEL  60
NHEAELNHSL NHQSVSQSLN QTNTEGLTEM RRIVGDDEFD SKSGSDNLEG GSGDEALDPN  120
QRPTKKKRYH RHTQHQIQEM EAFFKECPHP DDKQRKELSR ELNLEPLQVK FWFQNKRTQM  180
KTQHERHENT QLRTENDKLR AENMRYKEAL SNSSCPNCGG PAALGEMSFD EQHLRIENAR  240
LREEIDRISG MSAKFVGKTM QSYPFMPQQL PSRTSIDVGG SGMVGELFGG GGVHVQHNEV  300
VDKPVVIELA VAAMEELVRM AQIGEPLWLQ SGTDHSSTEL LNEEEYFRTF PRGIGPRPYG  360
LKSEASRQTS VVIMNHNNLV EILMDVNQWS ALFCSIVSKA ITIEVLSTGI AGNYNGALQV  420
MSSEVQVPSP LVPTRDSYFV RYCKQHGPGT WAVVDVSLES LRPNPVLKNR KRPSGCLIQE  480
MPNGYSKVTW VEHVEVDDRS VNEIYKPLVN SGLAFGAKRW LATLDRQCER LASSMATNVP  540
AGDIGVITSQ EGRKSMLKLA ERMVMSFCNG VSASTTHQWT TLSGSGAEDV RVMTRKSIDD  600
PGRPPGIVLS AATSFWLPIP PARVFDFLRD ENSRNEWDIL SNGGVVQEMA HIANGREQGN  660
CVSLLRVNSA SSNQSNMLIL QESCTDSTGS FVIYAPVDIV AMNVVLNGGD PDYVALLPSG  720
FAVLPDGPLQ NGGGGVVNNG DVMGNVGSNN GGSLLTVAFQ ILVDSAPTAK LSLGSVATVN  780
SLISCTVERI KGALSGGDTS R*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908855.1	0.0	homeobox-leucine zipper protein ROC2
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A0K9PQN6	0.0	A0A0K9PQN6_ZOSMR; Homeobox-leucine zipper protein ROC2
STRING	VIT_12s0059g02310.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Link Out ? help Back to Top
Phytozome	Zosma19g01250.1

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]