PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g01450.1
Common NameZOSMA_19G01450
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 237aa    MW: 26811.6 Da    PI: 8.8504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g01450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00037171193123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C+ Cg  F +   L  H+r+H
  Zosma19g01450.1 171 YACSVCGIKFISGQALGGHMRRH 193
                      89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-983106No hitNo description
PROSITE profilePS5015710.4584111IPR007087Zinc finger, C2H2
PfamPF139122.9E-684108IPR007087Zinc finger, C2H2
SMARTSM003550.9184106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-9166193No hitNo description
Gene3DG3DSA:3.30.160.608.7E-4168193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-8170194IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577171193IPR007087Zinc finger, C2H2
SMARTSM003550.029171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDPWKRNIYQ KYSNQHYISL SLFLTEDEKL SMEGVVLLHK QPMMKILETR GDAQNNMIFS  60
RNETIGDDSI IENKQAKLEN IHRYGCKTCN KRFLTLQDLD GHRVSHKKSK TTTRSIPYHP  120
YVHNTFNPSR FIENEGCNLD VSLGSAFSVI ASSSMPLSND CDIAIKKKKV YACSVCGIKF  180
ISGQALGGHM RRHRTIVQPI IRNSSQLTQP SCHFPFDLNF PAPFGENDLA EPTNSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PNK21e-178A0A0K9PNK2_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-27C2H2 family protein