PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma1g00270.1

Common Name

ZOSMA_1G00270

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 197aa MW: 21138.7 Da PI: 8.1295

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma1g00270.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.7	3.6e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+Ca+dC++ap fp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvye++ar+rdPvyG+vg i+ lq+ ++ql+ +la Zosma1g00270.1 7 PCASCKLLRRRCATDCIFAPFFPSDDPHKFAVVHKVFGASNVSKMLQDLPIQQRPDAVSSLVYESNARMRDPVYGCVGAISYLQNLVSQLQMQLA 101 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Zosma1g00270.1 102 VAQTE 106 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.408	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-41	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MAGGNSPCAS CKLLRRRCAT DCIFAPFFPS DDPHKFAVVH KVFGASNVSK MLQDLPIQQR 60 PDAVSSLVYE SNARMRDPVY GCVGAISYLQ NLVSQLQMQL AVAQTEILCI QMQQDSSNSP 120 SPVLMHPSAS SSHADEKNNN NNKNNTKNNT ISSSSFILTN NLSGLPQFFN SSAAASAGGP 180 SGNVTQERPT RESLWA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-46	3	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-46	3	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008804108.1	1e-78	LOB domain-containing protein 12
Swissprot	Q8LBW3	7e-68	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0K9PM51	1e-143	A0A0K9PM51_ZOSMR; Protein LATERAL ORGAN BOUNDARIES
STRING	XP_008804108.1	4e-78	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-69	LBD family protein

Link Out ? help Back to Top
Phytozome	Zosma1g00270.1

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]