PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g00310.1
Common NameZOSMA_1G00310
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 339aa    MW: 36071.1 Da    PI: 5.3743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g00310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-1869118255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aak +++a++ l+g
  Zosma1g00310.1  69 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAAKTYDRAALMLYG 118
                     69****999.**********954...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1969126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2869126IPR001471AP2/ERF domain
PROSITE profilePS5103222.23469126IPR001471AP2/ERF domain
PfamPF008473.2E-1269118IPR001471AP2/ERF domain
SMARTSM003801.5E-3469132IPR001471AP2/ERF domain
CDDcd000185.07E-3169128No hitNo description
PRINTSPR003671.3E-97081IPR001471AP2/ERF domain
PRINTSPR003671.3E-992108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMDDGTDQRR CPIEQYHRNP PPSESLPPAT TSITTNISSI NIPPAGAKSR RRGGGRLDQK  60
GGSENGKLRY RGVRQRSWGK WVAEIREPRK RTRKWLGTFS TAEDAAKTYD RAALMLYGSR  120
AQLNLQPSGC ADADGRASVS ISGGGGGSGS SCSSTLRPIL PRPPSGYAGF PMGGDAILPP  180
SAVGSANLNL DLDFGVFVYP LLPHPSSSSQ ADPIYSHCCA LSQSLQQHPT GCDDQIGCNN  240
NYVQKETIPT PTTSQMTPTS NIVEGLSLYG AETTESMIGL DQGGFPASMA EQHQAQPMIN  300
GGEEPMSPAV WDDYTTTAAA NATSSLWDDL VDPFLFDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1870125359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PP990.0A0A0K9PP99_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.19e-32ERF family protein