PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g01340.1
Common NameZOSMA_1G01340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 260aa    MW: 29939.3 Da    PI: 8.9014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g01340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-0685103825
                     GGGGTS.--TTTTT-SS-S CS
         zf-CCCH   8 ffartG.tCkyGdrCkFaH 25 
                     +++ +G  C+yG++C F H
  Zosma1g01340.1  85 NWYNSGkDCPYGSKCAFLH 103
                     5888888************ PP
2zf-CCCH24.35.5e-08145169226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k ++C ++ rtG C +G++C +aHg
  Zosma1g01340.1 145 KKKICFNWTRTGSCTFGNNCLYAHG 169
                     778999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-73267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.8033563IPR000571Zinc finger, CCCH-type
SMARTSM003560.513562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.18378106IPR000571Zinc finger, CCCH-type
SMARTSM003560.4979105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-581107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-682105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8142174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962143171IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5143170IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-10145176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQPITRSTMT TPLIRQHPPA FQSNNSSNEN NRSLFYKTRF CDRFKAGCCP LRSEDCSYAH  60
EASDLHDPPD NWHDKANWRP QKFCNWYNSG KDCPYGSKCA FLHLGQEKQL LNGHSRFQEP  120
SNIISIETNK FSSEINGEQR PLPTKKKICF NWTRTGSCTF GNNCLYAHGH TDQRNPSSST  180
EAEGPRGGGG LRVSVSDLAN ACRKDNDEKE RPAYNSKRVR EREFEYNHRK KNKTELAVNM  240
EYINSKCIKW RSQIYADWI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217230RVREREFEYNHRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMH40.0A0A0K9PMH4_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-18C3H family protein