PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g02380.1
Common NameZOSMA_1G02380
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 466aa    MW: 52515.9 Da    PI: 9.8753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g02380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.3e-07199221223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg++F+r+++L++H++  H
  Zosma1g02380.1 199 TCPQCGEVFTRSESLEHHQMIrH 221
                     8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.93198226IPR007087Zinc finger, C2H2
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-4199219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF563992.97E-16224282No hitNo description
Gene3DG3DSA:3.90.228.102.3E-10257462IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.97E-16315463No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MTISSLLPNP IVVAKPHTPN HRLTLQKDLQ LRKQYEVERR DLEEEMERRR RRRKKKKKKK  60
QQELLQRQKR QVLPPPSSWK LFKSLLTCRS VAPTQVHDPS YVPTTYGKLG SSCSGMCSIK  120
DVVHSSTRVV HRRDHDKSSD TMSLHQAPET KLLLTARNND GRNNHQSSRG MQLRKLSGCY  180
ECHAISHPTR YPTPRTICTC PQCGEVFTRS ESLEHHQMIR HAVSELGSED SGRNIVEIIF  240
KSSWMKKEIV VDYKNIKTIG NNICEIDRIL KVQNTQRTIN RFEEYRDAIK SRAGLRYKES  300
GNENDNPVVI KKKNPRCGAD GNELLRFHCT TLSCPLGADG STTLCSGYSS TPPCGVCSII  360
RHGFGRARQD PGKGVKTTAS SGRAHECSLS PGEENQGLEG TTRAMLVCRV IAGKVRKSED  420
AVDRMGTDSV GCRYDSIGSE NLEDLFVTNP RAILPCFVVI YQTWK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752RRRRRR
24760RRRRRRKKKKKKKQ
35157RRKKKKK
45159RRKKKKKKK
55359KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276294.11e-135PREDICTED: uncharacterized protein LOC100250572
TrEMBLA0A0K9PMR80.0A0A0K9PMR8_ZOSMR; C2H2-like zinc finger protein
STRINGVIT_18s0001g14130.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-99C2H2-like zinc finger protein