PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g02640.1
Common NameZOSMA_1G02640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRF
Protein Properties Length: 553aa    MW: 60267 Da    PI: 8.1301
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g02640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.46e-24193236144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs++v +++k+CErHlhrgr rsrk++ 
  Zosma1g02640.1 193 DPEPGRCRRTDGKKWRCSKDVAPDQKYCERHLHRGRPRSRKPVG 236
                     79***************************************975 PP
2QLQ44.83.7e-16122153132
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                     s FT+ Q+q+Lk+Q+l+yK+++++ P+Pp+Ll
  Zosma1g02640.1 122 SVFTPLQWQELKRQALIYKHIVSSSPIPPDLL 153
                     67****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-6122158IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.541123158IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.1E-12124153IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.611193237IPR014977WRC domain
PfamPF088791.9E-20194235IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MERQNIDRHE YPQKMIRTDA YPFPYPFRTT SSPIANVHHL PPLHPSSGTI NVGTINEPIA  60
NFFYNPNGNG GCSTYDSPPI SPSIYDVDGG ALGPRMPSFK SQAAAMDFGM GGGLNHHQHC  120
YSVFTPLQWQ ELKRQALIYK HIVSSSPIPP DLLVDTTCCK GALPSVPPLY PNLSRNGVAG  180
GGYFNLRFTN NTDPEPGRCR RTDGKKWRCS KDVAPDQKYC ERHLHRGRPR SRKPVGQQRR  240
KNTAPVADSE TTVKSNTTCT TTSIKKTTLS DAVLPHANIG SSETLGYGQT SSRSLPFSPI  300
ESDKEPRYLD WMIGGLAEIN SNTKLNNNIS PNLPTDAAAS SCSSLHQYEE QLKLNYSSEI  360
NDACNSLFLN NDYSSHSDGN QEQDHGRYPL RSFIDAWSNE KTSVGRNMAS TSPSNLTLSM  420
ANHNNTEESS INNIQMGLGI SNNMGCGRSN SLSWMNPIST PLGGPLAEAL QSTSSPRNSS  480
EEVDGVMGNS KSNNGGLVNL LGWSCCESPK KSSPPRMIVS SPTGVLQRTL VSLSDSSSNS  540
SPTFQWMNSH TK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PPY50.0A0A0K9PPY5_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2255846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-34growth-regulating factor 2