PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g03330.1
Common NameZOSMA_1G03330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 529aa    MW: 60474.6 Da    PI: 9.6713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g03330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00072340362123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C+ C++ F++   L  H+++H
  Zosma1g03330.1 340 YACSFCKREFRSAQALGGHMNVH 362
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056372.3E-2086229IPR008630Glycosyltransferase 34
SuperFamilySSF576678.38E-6337366No hitNo description
PROSITE profilePS5015711.198340367IPR007087Zinc finger, C2H2
PfamPF139124.9E-6340363IPR007087Zinc finger, C2H2
SMARTSM003550.0092340362IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280342362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MIIILLVLIF LIFVHSSTIV LQGANVLGRR CISPEVKIKE HGESLSGLKI AMVSFLDEES  60
NGEVRVSESG LMRWPMKKSS RSFEGLMGLV KTNKQAYATK WGYDFIDARS CIDRSRPASW  120
SKIPSVRSHL HGYDWVFWND ADSVVTNPNI RLERILQHAT VMNSNTNEQN PDLIITEDVN  180
GVNAGMFFLR RSKWSEGFLD TWWNMSSFIL RGSKKSGDNA ALIHLINSLS PSEKLRNVHV  240
AEMQCIFNSY PWVPTWKNFY RFLLSPCSFW KGIRMERYHR SFNENSPRKN SNRNNDDDDE  300
DDNNNIMRRN RNYMSGSYFV RRETSYGSFL AGVSWPPRSY ACSFCKREFR SAQALGGHMN  360
VHRRDRARLR DSSPWDPPSS LLDEPNSNTN TRVTNPNPKP KPKPKPADKI IEEERSTAAT  420
ISNIPNLNLI PDLVSDTTPF SPPPWALQRF PSYVPSKPLY SSSGAKHVST RPRSSTMKTS  480
RVLFGVEEDR LLRRKMDIVR LDLKIGLHES NDDDLAGDEM DLELRLGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-13335362229superman protein
2l1o_A3e-13335362229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PN000.0A0A0K9PN00_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-19C2H2 family protein