PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g03450.1
Common NameZOSMA_1G03450
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 209aa    MW: 24050.7 Da    PI: 9.9291
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g03450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.91.3e-29134189156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r+rW  eLH+rFv+a+++LGG+ +AtPk+i++lm+v gLt+++vkSHLQk+Rl+
  Zosma1g03450.1 134 KTRRRWCRELHRRFVDALNELGGPRVATPKNIKKLMNVRGLTNDEVKSHLQKHRLH 189
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-16131193IPR009057Homeodomain-like
PROSITE profilePS5129411.561131191IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-26132192IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-23134189IPR006447Myb domain, plants
PfamPF002495.8E-6136187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MPSMSFDLNL APEIVEKASE WVERRKYGHS LLQLKEHIRC LEDELAKIQP FGSDLFLVVG  60
IVKHVITKLK EDLRRFEDVE MEGDRIINPN DNLSTTSTTT TTTTAAAIPL TCVVMADDGG  120
ERMSYWRSQY PSRKTRRRWC RELHRRFVDA LNELGGPRVA TPKNIKKLMN VRGLTNDEVK  180
SHLQKHRLHF KKIFGHGLMD NWTSSSKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-14134187154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14134187154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14134187154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14134187154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMR41e-154A0A0K9PMR4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16835911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.13e-26G2-like family protein