PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma1g03800.1

Common Name

ZOSMA_1G03800

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 253aa MW: 29101 Da PI: 10.1813

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma1g03800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.2	1e-36	58	157	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+lap fpa+qp f n+h+lFG+sn++kllk+++ e++dam+s+++++++rar Pv G++ vi++lq++l+ +a+la Zosma1g03800.1 58 ACAACKHQRRRCQPDCILAPFFPADQPDIFINAHRLFGVSNITKLLKSIDVREHRDAMNSIIFHSDCRARYPVGGCLDVIKNLQNKLDVYNAQLA 152 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+e+ Zosma1g03800.1 153 FLNER 157 98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.526	57	158	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-35	58	154	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MKMLPIVQTR MNGRSNGPIR RNYRGRSNHV VNQIHPYVDL SKRPPPLLVA TTPTSSHACA 60 ACKHQRRRCQ PDCILAPFFP ADQPDIFINA HRLFGVSNIT KLLKSIDVRE HRDAMNSIIF 120 HSDCRARYPV GGCLDVIKNL QNKLDVYNAQ LAFLNERIAF FQNLGSNSYF IQQQQQQQQQ 180 QQQTITMPNS NSSHHHHHHH RRHQQPTGEA DFLPLLSNVL QQTVKNNQKK EEEEMASNKK 240 IMVHEVDPRQ QS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-25	51	144	4	97	LOB family transfactor Ramosa2.1
5ly0_B	8e-25	51	144	4	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PQ85	0.0	A0A0K9PQ85_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-34	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Zosma1g03800.1