PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g03850.1
Common NameZOSMA_1G03850
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 317aa    MW: 34102.2 Da    PI: 4.2974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g03850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088294315323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     C+ C+k+F++  +++ H +  H
  Zosma1g03850.1 294 CKSCSKTFKSEASMQAHSKAkH 315
                     *****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF692033.92E-5394IPR024057Nucleoplasmin core domain
PfamPF030664.5E-721185No hitNo description
Gene3DG3DSA:2.60.120.3400.0012196IPR024057Nucleoplasmin core domain
PROSITE profilePS5015710.305292316IPR007087Zinc finger, C2H2
PROSITE patternPS000280294315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEFWGVEVPV NTPLKCIPGD DKYIHLSQVC LGEFKKGSSG TVPVTVTVDD NKFVIGTLIP  60
GSCNQISLDL VFEKEVQFSH GWKDGSVFLT GYKTINAVDD DMDDFCSSDS EDEEDVVAVP  120
LENKSANGKV DKDEQSRPTP KPLTDPSKPK VKANGEDSKT KAKGKLPVVS KKDEKDEDDS  180
DESDEDFGED DDSDSEMIER GDDSSDDSDE DDNDDEDDDD SSSDEEEVKV APPPKAEAGK  240
KRPASSDAKA SLPGKKAKTV IPAAKSDVQK GGDKKTTPTK QQQQTPKSAG SVNCKSCSKT  300
FKSEASMQAH SKAKHA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PQ910.0A0A0K9PQ91_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-21histone deacetylase 2C