PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma200g00090.1
Common NameZOSMA_200G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 204aa    MW: 22649.7 Da    PI: 7.2659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma200g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-194493255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+G+r+++ +g+W+AeIrdp     +  r++lg+f tae+Aa+a+++ +k+++g
  Zosma200g00090.1 44 QYRGIRRRP-WGKWAAEIRDPM----KgVRVWLGTFTTAEDAARAYDKEAKRIRG 93
                      6********.**********84....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-3244103IPR001471AP2/ERF domain
CDDcd000182.18E-3144102No hitNo description
SMARTSM003801.8E-3644107IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2244102IPR016177DNA-binding domain
PROSITE profilePS5103224.01244101IPR001471AP2/ERF domain
PRINTSPR003671.6E-114556IPR001471AP2/ERF domain
PfamPF008471.2E-104593IPR001471AP2/ERF domain
PRINTSPR003671.6E-116783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MCGGAIISDF IPLRRSKDDH LISPAYSNPE KDEVPRKKRE RKNQYRGIRR RPWGKWAAEI  60
RDPMKGVRVW LGTFTTAEDA ARAYDKEAKR IRGRKAKLNF PDKKQSPPPL PPSLPVDPPP  120
PLAKAPALPV EFGTGTGSSS TSCGVGENVD LMEIERFIRE VEEDQRFAIG GVGTSEIGSA  180
TVEENGDLEL WNLDDMFPLS DIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2244106568ATERF1
3gcc_A2e-2244106568ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13751KRERKNQYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386485.12e-43PREDICTED: ethylene-responsive transcription factor ERF071-like
RefseqXP_010921624.12e-43ethylene-responsive transcription factor ERF071
TrEMBLA0A0K9PLZ61e-146A0A0K9PLZ6_ZOSMR; Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-38ERF family protein