PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma200g00150.1
Common NameZOSMA_200G00150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 126aa    MW: 13886.2 Da    PI: 11.0665
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma200g00150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-182559135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C+ttkTplWR gp+g+k+LCnaCG+++rkk++
  Zosma200g00150.1 25 CQICRTTKTPLWRGGPSGPKSLCNACGIRHRKKRR 59
                      999*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.9521955IPR000679Zinc finger, GATA-type
SMARTSM004014.3E-131972IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-132266No hitNo description
Gene3DG3DSA:3.30.50.105.5E-162459IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.66E-122459No hitNo description
PROSITE patternPS0034402550IPR000679Zinc finger, GATA-type
PfamPF003202.5E-162559IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDGKTTKTEL VSSPTTSSSA GMKACQICRT TKTPLWRGGP SGPKSLCNAC GIRHRKKRRE  60
LHVSCYPTAA TKPKKKENSN QNVLRLFLLQ QRSSILKLRR RHRLVEEEEA AVLLMALSSG  120
SLYSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084018.16e-29GATA transcription factor 15
RefseqXP_028068252.17e-29GATA transcription factor 15-like
TrEMBLA0A0K9PP639e-86A0A0K9PP63_ZOSMR; GATA transcription factor 16
STRINGevm.model.supercontig_9.1027e-28(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-20GATA transcription factor 15