PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma202g00370.1
Common NameZOSMA_202G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 862aa    MW: 96947.7 Da    PI: 6.5505
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma202g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07803857147
                       TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 
                       r+ WT eE+e+l+ av++l +g     W  I ++      k R + ++k++w++ 
  Zosma202g00370.1 803 RLVWTLEEEEILKVAVRKLSNGkiryPWLEILNYGRdvfhKSRKPTDLKDKWRNM 857
                       789*******************************99*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.88E-8505564IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.2E-7507565IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002490.0029514560IPR001965Zinc finger, PHD-type
PROSITE profilePS500907.004798858IPR017877Myb-like domain
SuperFamilySSF466891.13E-7800858IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-7802860IPR009057Homeodomain-like
CDDcd116601.81E-10806859No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MKIYISIPES NIPTVMQIPS LDFNLEMSSA TSPEALKLAW QWAIEALVDS KKVESSFLKE  60
LIDRNIGDLK DSNMNENVSL GNLEELVESD GLKSLSKVNS SSVVRVSENC SEKIKVDQRS  120
ENEFFGSIQQ LKDNVDKTCV KPVLSLMGKP GLSQEIQSNH LHNLIDNRLN HHGDVPSSNI  180
SPRAEVHSAN LHGLNQCKND SICIVNDSSL SYGFKDKQSL EELQNGDKRP IQCILNQTYL  240
IGKDELSEKN QPGHLQDLDD VNKLKKISNC SDKVPSSSIL HFDDVSSPNI PPHTEVHSAD  300
LHGLDQCKKD SVCIVNDSTS SHGFKGKQSL EKLQNGDKKH TQRPLSRTSF LRKHGLLEKQ  360
QPCHLHDLDN VSSLKEISSC SDKTQPSSIL HCDDVPSPNI PSQSGAHSAD LHGFNQCKKD  420
SVCTVNDSNL SHGFKGKSSL GEQQNRNKKN AHPSLIPVIP SGREDDEESI KQQGEHENEK  480
TVHNSLKEAI EAFVKDKLVT SQIPDGDDET HQQMCIKCSK SDQLLVCCGD CCPIAIHESC  540
LGSPPSFDED TREFYCPFCS YIKAAKAYDN AKKKVYRCKE YLSSFMTGLD KVPSMKPVQS  600
VSQKRSSSSD GDIEKHYHIE ERIKRNKGNA MKETEGHNTT GEHAMKEMEG RNMAGEHAMK  660
ETEGHNMTGE HTMKETEGHN TTGEHAMNRS KPLNQEKKDE LIILKDNNSS KCNGIAKSSD  720
EVSHYIQVTK ESHENIEGSN ASEQHLFDEN ATRMNESKDQ MPSSSVQIPT AKVEKEPEIY  780
RELPEELMKE PLNFQYLYSR RKRLVWTLEE EEILKVAVRK LSNGKIRYPW LEILNYGRDV  840
FHKSRKPTDL KDKWRNMQRK M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PNY10.0A0A0K9PNY1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP273533