PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma203g00090.1
Common NameZOSMA_203G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27076.9 Da    PI: 8.8991
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma203g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81.1e-261059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +++fs tg+ly+++s
  Zosma203g00090.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLMVFSGTGRLYDFAS 59
                      8***********************************************86 PP
2K-box81.61.9e-2778171899


   


	

		Protein Features
		? help Back to Top
	

	
3D Structure
	

		Database
		Entry ID
		E-value
		Start
		End
		InterPro ID
		Description
	


	
SMARTSM004322.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.567161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-31291IPR002100Transcription factor, MADS-box
CDDcd002654.55E-45276No hitNo description
PRINTSPR004041.2E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2582170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.91186178IPR002487Transcription factor, K-box

	 
  
 


	

		Gene Ontology ? help Back to Top
	

	

		GO Term
		GO Category
		GO Description
	


	
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity

	  
 


	

		Sequence ? help Back to Top
	

		

		Protein Sequence    Length: 236		aa    
		Download sequence    Send
		to blast
	

	

		
MGRGKIIIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLMVFSG TGRLYDFAST  60
SMKSVIDRYN KAKEDHNNLT NATSEDMFWQ REAACMRQKL QMLRENQRHL MGEELSGLRL  120
KDLQNLENQL EMSLRGIRTK KDQILTNEIQ ELSQKGNLIH QENIELYKEV QVYNQHKGGG  180
SNDRAADKFP QVCPHGLSSR DEMRVPFLHL ELCQPQQQQN YEMAPSDPIL GLQLN*

	




   


	

		3D Structure ? help Back to Top
	

	
Structure
	
	
	
	

		PDB ID
		Evalue
		Query Start
		Query End
		Hit Start
		Hit End
		Description
	


	
5f28_A1e-21182182MEF2C
5f28_B1e-21182182MEF2C
5f28_C1e-21182182MEF2C
5f28_D1e-21182182MEF2C
6bz1_A1e-21192192MEF2 CHIMERA
6bz1_B1e-21192192MEF2 CHIMERA
6bz1_C1e-21192192MEF2 CHIMERA
6bz1_D1e-21192192MEF2 CHIMERA
	
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	Functional Description  ? help
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		Source
		Description
	

	
UniProtProbable transcription factor.
	
	
	
	










	
	        

        

        Regulation -- PlantRegMap  ? help
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                Source
                Upstream Regulator
		Target Gene
        

        
PlantRegMapRetrieve-
	

	        


	










 
	  
	

	

		Annotation -- Protein
		? help Back to Top
	

	

		Source
		Hit ID
		E-value
		Description
	

	
RefseqXP_024026632.11e-104MADS-box transcription factor 23 isoform X2 
SwissprotQ6EP493e-88MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0K9PNT11e-174A0A0K9PNT1_ZOSMR; Putative agamous-like MADS-box protein AGL21-related ZmMADS4, AGL17/ANR1 sub-family
STRINGXP_010254615.11e-101(Nelumbo nucifera)

   
 


	

		Orthologous Group
		? help Back to Top
	

	
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
  
	

        

                Best hit in Arabidopsis thaliana ? help
                Back to Top
        

        

                Hit ID
                E-value
                Description
        

	
AT4G37940.11e-85AGAMOUS-like 21



 
  
 


	

		Publications
		? help Back to Top
	

	

	
	
    
	
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
    3.