PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma205g00100.1
Common NameZOSMA_205G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 289aa    MW: 31719.6 Da    PI: 8.259
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma205g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.68.5e-13133225390
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y ++ + +GF vr  ++k+     + ++  +++ + Csk+g+++     t+ +rr++ ++r+gC a++k k+ + +++w  ++++ +HnH+++
  Zosma205g00100.1 133 YYDFTSVTGFFVRLGSTKNVvdneSGQKILVMKMLLCSKQGSPSLILPPTNGNRRKNGVSRCGCLASIKFKRLDrSDNWATDTVNFDHNHSFT 225
                       8899999******999888766544555678999***********999999********************9999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-10133225IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNYGTAKKPN SLNFQSNSSD RHTNVNPTAC SDNVSTPLDP DVVCSTFFDP EFVQSTPAEI  60
RESSAEILFS SANLGCGTAK TPDNYCKRKF SSPVHDHASF DHENASSSYN QCNKPCPVVG  120
QVFSSYELDV QSYYDFTSVT GFFVRLGSTK NVVDNESGQK ILVMKMLLCS KQGSPSLILP  180
PTNGNRRKNG VSRCGCLASI KFKRLDRSDN WATDTVNFDH NHSFTTPSKI RYLPINRSIS  240
HTSKLLFSSL AEVNISVSQQ AAYFSNQLGG IQNMGCMKTL TIWSVIIA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PLJ50.0A0A0K9PLJ5_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-13FAR1-related sequence 11