PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma205g00230.1
Common NameZOSMA_205G00230
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 105aa    MW: 11772 Da    PI: 10.9065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma205g00230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.7e-1128952994
                      -..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3 29 kkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                      +  e++ ++l+d +gr    ++    + k +  v +kGW ++vk+n Lk gD++ Fk++ ++++  v+
  Zosma205g00230.1 28 IISEPQNIMLKDAKGRAGMARIYQngNLKNQFRVRGKGWLQMVKDNTLKNGDVCKFKFIVSKTKDHVL 95
                      3357789********999999944433333336778*********************88554443344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.8252101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-11389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-101089IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-92697IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MVTLKRYNLL IKSMSYLNIP GSANLTGIIS EPQNIMLKDA KGRAGMARIY QNGNLKNQFR  60
VRGKGWLQMV KDNTLKNGDV CKFKFIVSKT KDHVLCLLSK NNLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PNP12e-69A0A0K9PNP1_ZOSMR; Uncharacterized protein