PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma205g00240.1
Common NameZOSMA_205G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 286aa    MW: 33438.1 Da    PI: 9.9352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma205g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-1713106199
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       ffkvl   d + ++ l++p kf+ee+       ++ ++ l++   g++W+vk+  r +s++ y+ ++GWkeFv++++L  g f+vF + +++ 
  Zosma205g00240.1  13 FFKVL--LDGFDEK-LRIPDKFVEEClpR----GQEKVNLNSsILGKVWTVKI--RCHSDGfYFSGDGWKEFVRDHDLHFGYFLVFVYCWENI 96 
                       88999..8999887.***********542....445899999899********..66666648888***********************9988 PP

                       E..EEEEE-S CS
                B3  90 felvvkvfrk 99 
                        +++vk f++
  Zosma205g00240.1  97 NNFFVKPFDH 106
                       8889999987 PP
2B346.95e-15153246397
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                       k+ + s++ +   + +p  f +++++++ +  ++tl+ ++gr+W vk+++  rk++ +  ++ GWk F ++n+L+  D+++F+l+++ +++  
  Zosma205g00240.1 153 KIVMASSYIQY--MHFPSGFRDSNNLSSIS--EVTLTGKDGRRWLVKFRHtpRKNRLSSAFSIGWKAFKNENNLQKDDVCIFYLSSKdENTAN 241
                       55556666655..78999999999888544..8***************99666666669999**********************976566666 PP

                       EEEEE CS
                B3  93 vvkvf 97 
                       ++ +f
  Zosma205g00240.1 242 FFVIF 246
                       66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.15310107IPR003340B3 DNA binding domain
CDDcd100173.08E-1511105No hitNo description
SuperFamilySSF1019365.89E-1812109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-1812109IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-1413107IPR003340B3 DNA binding domain
PfamPF023621.8E-1413106IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337149249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-14151238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-14151243IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-12152246No hitNo description
SMARTSM010192.5E-8152250IPR003340B3 DNA binding domain
PfamPF023622.2E-12152247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVVGAREVID REFFKVLLDG FDEKLRIPDK FVEECLPRGQ EKVNLNSSIL GKVWTVKIRC  60
HSDGFYFSGD GWKEFVRDHD LHFGYFLVFV YCWENINNFF VKPFDHSGCR KFYAPIDQED  120
KTMNQHAAVN VEQCVNKATA IDDDQNQIQN QFKIVMASSY IQYMHFPSGF RDSNNLSSIS  180
EVTLTGKDGR RWLVKFRHTP RKNRLSSAFS IGWKAFKNEN NLQKDDVCIF YLSSKDENTA  240
NFFVIFQQKR RKQDNSKVVG RKKNRKARNQ SESIKKKPIL QTVQR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PLA90.0A0A0K9PLA9_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.19e-17B3 family protein