PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma20g00010.1
Common NameZOSMA_20G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25204.8 Da    PI: 10.1739
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma20g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.6e-184799456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++++t++q++ Le  F ++r++   ++ +LAk+lg++ +qV vWFqNrRa+ k
  Zosma20g00010.1 47 KRRLTEDQVKFLEMKFWEERKLESGRKVQLAKELGIDPKQVAVWFQNRRARSK 99
                     5689***********************************************99 PP
2HD-ZIP_I/II111.55.6e-3646137293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      kkrrl+++qvk+LE++F ee+kLe+ rKv+la+eLg++p+qvavWFqnrRAR k+k+lE+dy  Lk+ +d+++ ++++ ++e  +L+++l+e
  Zosma20g00010.1  46 KKRRLTEDQVKFLEMKFWEERKLESGRKVQLAKELGIDPKQVAVWFQNRRARSKSKKLEEDYMNLKSLHDSIVIQKCHHQTEIVKLTKQLSE 137
                      9***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.24441101IPR001356Homeobox domain
SMARTSM003891.4E-1343105IPR001356Homeobox domain
SuperFamilySSF466891.56E-1546107IPR009057Homeodomain-like
PfamPF000462.9E-154699IPR001356Homeobox domain
CDDcd000861.19E-1246102No hitNo description
Gene3DG3DSA:1.10.10.609.3E-1748107IPR009057Homeodomain-like
PRINTSPR000318.0E-67281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000318.0E-68197IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MLSSMIQTNA VICGNIFPNK EEERKARRRR RRRMRNDKGE ETAEVKKRRL TEDQVKFLEM  60
KFWEERKLES GRKVQLAKEL GIDPKQVAVW FQNRRARSKS KKLEEDYMNL KSLHDSIVIQ  120
KCHHQTEIVK LTKQLSEAQE EIRKLKVAMS GGEMSSNSQS TSFSSFHTMY MDTAPRAFHA  180
GGRRIINNNI IGGNEDELLY MNDYFHIFDW LQSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12331RKARRRRRR
22332RKARRRRRRR
32533ARRRRRRRM
42632RRRRRRR
52734RRRRRRMR
63048RRRMRNDKGEETAEVKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00591DAPTransfer from AT5G66700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA2YN171e-37HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
SwissprotQ7XI851e-37HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A0K9PMS01e-159A0A0K9PMS0_ZOSMR; Homeobox leucine zipper protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-39homeobox 53
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]