PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma20g00030.1
Common NameZOSMA_20G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23502 Da    PI: 8.0587
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma20g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.54.7e-2023621049
                     HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     qvtfskR++gi+ KA+E+S+LC+a v+v+ifs+ gkl+ +
  Zosma20g00030.1 23 QVTFSKRKAGIFNKASEISILCGAHVLVVIFSPGGKLFMF 62
                     9************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-28665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.507666IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-23676IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-16828IPR002100Transcription factor, MADS-box
PfamPF003192.8E-201662IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVRKNMGRKR LEMKKIVRED ALQVTFSKRK AGIFNKASEI SILCGAHVLV VIFSPGGKLF  60
MFGSPDANTM MQCFVTGDPM RPPNLNAFND QIMMPHFTSE LTEVSIIRDR EKKYLSDLNK  120
SLKECGMEED NLDELGVDKL EVYISSLNQM RHKLVSYLGY LTTSNPNPNP PTSSAGLDPR  180
FHQMMSDGYY INNVGGNAGA INDGSTFIYS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMS21e-155A0A0K9PMS2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62