PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma20g00250.1

Common Name

ZOSMA_20G00250

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 243aa MW: 28277.2 Da PI: 4.8765

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma20g00250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.3e-20	67	120	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q+e Le+ F +++ +++ +LAk lgL+ rqV +WFqNrRa++k Zosma20g00250.1 67 KKRRLTSTQVESLEKSFDTGNKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARWK 120 56789************************************************9 PP
2	HD-ZIP_I/II	132.8	1.2e-42	66	157	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++ qv++LE+sF++ +kLep+rK +la++Lglqprqva+WFqnrRAR+ktkqlE+dye+Lk++yd lk+++++L++e e+Lr+e++ Zosma20g00250.1 66 EKKRRLTSTQVESLEKSFDTGNKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLERDYETLKQNYDDLKTNHDSLHEEREKLRTEVM 157 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-19	57	124	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.925	62	122	IPR001356	Homeobox domain
SMART	SM00389	4.5E-19	65	126	IPR001356	Homeobox domain
CDD	cd00086	7.92E-15	67	123	No hit	No description
Pfam	PF00046	4.4E-17	67	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-20	68	129	IPR009057	Homeodomain-like
PRINTS	PR00031	8.5E-6	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.5E-6	102	118	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.5E-16	122	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MAASGSGSGF KGSEGIQSLF HDSRSMSTNL EDIHEGEGNR SSFFHNIDME ECMNYEDYEE 60 GFYHPEKKRR LTSTQVESLE KSFDTGNKLE PDRKIQLAKD LGLQPRQVAI WFQNRRARWK 120 TKQLERDYET LKQNYDDLKT NHDSLHEERE KLRTEVMVLK EKLGKSENEN VNFKTEEHET 180 AVEEEKPKST VVCKQEEICS TNSVVMDSDV LQNLNMQKID RKGNSRGFGF LEEDTDLWSW 240 NY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287102.1	2e-57	homeobox-leucine zipper protein HAT5-like
Swissprot	A2YWC0	3e-44	HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
Swissprot	Q6Z248	3e-44	HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBL	A0A0K9PMU3	1e-180	A0A0K9PMU3_ZOSMR; Homeobox-leucine zipper-like protein
STRING	POPTR_0015s07640.1	1e-56	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16055	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	8e-45	homeobox 1

Link Out ? help Back to Top
Phytozome	Zosma20g00250.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]